Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Abstract The Tara Pacific expedition (2016-2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58,000 samples. The expedition was designed to systematically study warm coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps but also through a global analysis allowing the comparison with known environmental large-scale structures. Such a wide released datasets opens the perspective to address a wide range of scientific questions.
Boissin Emilie、Paz-Garc¨aa David A.、Bourdin Guillaume、Poulain Julie、Reverdin Gilles、Kelly Rachel L.、John Seth G.、Agostini Sylvain、Cassar Nicolas、Lin Yajuan、Marie Dominique、McMinds Ryan、Metzl Nicolas、Romac Sarah、Bowler Chris、Reynaud St¨|phanie、Sunagawa Shinichi、Thomas Olivier、Thurber Rebecca Vega、Wincker Patrick、Zoccola Didier、R?ttinger Eric、Silva Oph¨|lie Da、Dimier C¨|line、Flores J. Michel、Ras Jos¨|phine、Hume Benjamin C.C.、Elineau Amanda、de Vargas Colomban、Furla Paola、Lombard Fabien、Conan Pascal、Planes Serge、Voolstra Christian R.、Gorsky Gaby、Baudena Alberto、Pesant St¨|phane、Iwankow Guillaume、Douville Eric、Pujo-Pay Mireille、M¨|riguet Zo¨|、Boss Emmanuel、Troubl¨| Romain、Vardi Assaf、Jalabert Laetitia、Allemand Denis、Rouan Alice、Ghiglione Jean Fran?ois、Koren Ilan、Galand Pierre E.、Banaigs Bernard、Fin Jonathan、Sullivan Matthew B.、Forcioli Didier、Gilson Eric、Pedrotti Maria Luiza、Clampitt Megan、Moulin Cl¨|mentine
PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d?ˉExcellence CORAIL, Universit¨| de PerpignanCONACyT-Centro de Investigaciones Biol¨?gicas del Noroeste (CIBNOR). Laboratorio de Necton y Ecolog¨aa de ArrecifesLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRS||School of Marine Sciences, University of MaineG¨|nomique M¨|tabolique, Genoscope, Institut Fran?ois Jacob, CEA, CNRS, Univ Evry, Universit¨| Paris-SaclayLaboratoire LOCEAN/IPSL, Sorbonne Universit¨|-CNRS-IRD-MNHNDepartment of Earth Science, University of Southern CaliforniaDepartment of Earth Science, University of Southern CaliforniaShimoda Marine Research Center, University of TsukubaNicholas School of the Environment, Duke University||Laboratoire des Sciences de l?ˉEnvironnement Marin, UMR 6539 UBO/CNRS/IRD/IFREMER, Institut Universitaire Europ¨|en de la MerNicholas School of the Environment, Duke University||Laboratoire des Sciences de l?ˉEnvironnement Marin, UMR 6539 UBO/CNRS/IRD/IFREMER, Institut Universitaire Europ¨|en de la Mer||Environmental Research Center, Duke Kunshan UniversitySorbonne Universit¨|, CNRS, Station Biologique de RoscoffUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Maison de la Mod¨|lisation, de la Simulation et des Interactions (MSI)||Department of Microbiology, Oregon State UniversityLaboratoire LOCEAN/IPSL, Sorbonne Universit¨|-CNRS-IRD-MNHNResearch Federation for the study of Global Ocean Systems Ecology and Evolution||Sorbonne Universit¨|, CNRS, Station Biologique de RoscoffResearch Federation for the study of Global Ocean Systems Ecology and Evolution||Institut de Biologie de l?ˉEcole Normale Sup¨|rieure, Ecole Normale Sup¨|rieure, CNRS, INSERM, Universit¨| PSLCentre Scientifique de Monaco, 8 Quai Antoine IerDepartment of Biology, Institute of Microbiology and Swiss Institute of BioinformaticsMarine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of IrelandDepartment of Microbiology, Oregon State UniversityG¨|nomique M¨|tabolique, Genoscope, Institut Fran?ois Jacob, CEA, CNRS, Univ Evry, Universit¨| Paris-SaclayCentre Scientifique de Monaco, 8 Quai Antoine IerUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de MonacoLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSWeizmann Institute of Science, Department of Earth and Planetary SciencesLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSDepartment of Biology, University of KonstanzLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSResearch Federation for the study of Global Ocean Systems Ecology and Evolution||Sorbonne Universit¨|, CNRS, Station Biologique de RoscoffUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de MonacoLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRS||Research Federation for the study of Global Ocean Systems Ecology and Evolution||Institut Universitaire de FranceSorbonne Universit¨|, CNRS- UMR 7621, LOMIC, Observatoire Oc¨|anologique de BanyulsPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d?ˉExcellence CORAIL, Universit¨| de PerpignanDepartment of Biology, University of KonstanzLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRS||Research Federation for the study of Global Ocean Systems Ecology and EvolutionLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome CampusPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d?ˉExcellence CORAIL, Universit¨| de PerpignanLaboratoire des Sciences du Climat et de l?ˉEnvironnement, LSCE/IPSL, CEA-CNRS-UVSQ, Universit¨| Paris-SaclaySorbonne Universit¨|, CNRS- UMR 7621, LOMIC, Observatoire Oc¨|anologique de BanyulsLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSSchool of Marine Sciences, University of MaineTara Ocean FoundationWeizmann Institute of Science, Department of Plant and Environmental ScienceLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSCentre Scientifique de Monaco, 8 Quai Antoine IerUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de MonacoSorbonne Universit¨|, CNRS- UMR 7621, LOMIC, Observatoire Oc¨|anologique de BanyulsWeizmann Institute of Science, Department of Earth and Planetary SciencesResearch Federation for the study of Global Ocean Systems Ecology and Evolution||Sorbonne Universit¨|, CNRS, Laboratoire d?ˉEcog¨|ochimie des Environnements Benthiques, UMR 8222PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d?ˉExcellence CORAIL, Universit¨| de PerpignanLaboratoire LOCEAN/IPSL, Sorbonne Universit¨|-CNRS-IRD-MNHNDepartment of Microbiology and Department of Civil, Environmental and Geodetic Engineering, The Ohio State UniversityUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de MonacoUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de Monaco||Department of Medical Genetics, CHU NiceLaboratoire d?ˉOc¨|anographie de Villefranche, UMR 7093, Sorbonne Universit¨|, CNRSUniversit¨| C?te d?ˉAzur, CNRS, INSERM, Institute for Research on Cancer and Aging||Universit¨| C?te d?ˉAzur, Institut F¨|d¨|ratif de Recherche - Ressources Marines (IFR MARRES)||LIA ROPSE, Laboratoire International Associ¨| Universit¨| C?te d?ˉAzur - Centre Scientifique de MonacoTara Ocean Foundation
海洋学环境科学理论环境科学技术现状
Boissin Emilie,Paz-Garc¨aa David A.,Bourdin Guillaume,Poulain Julie,Reverdin Gilles,Kelly Rachel L.,John Seth G.,Agostini Sylvain,Cassar Nicolas,Lin Yajuan,Marie Dominique,McMinds Ryan,Metzl Nicolas,Romac Sarah,Bowler Chris,Reynaud St¨|phanie,Sunagawa Shinichi,Thomas Olivier,Thurber Rebecca Vega,Wincker Patrick,Zoccola Didier,R?ttinger Eric,Silva Oph¨|lie Da,Dimier C¨|line,Flores J. Michel,Ras Jos¨|phine,Hume Benjamin C.C.,Elineau Amanda,de Vargas Colomban,Furla Paola,Lombard Fabien,Conan Pascal,Planes Serge,Voolstra Christian R.,Gorsky Gaby,Baudena Alberto,Pesant St¨|phane,Iwankow Guillaume,Douville Eric,Pujo-Pay Mireille,M¨|riguet Zo¨|,Boss Emmanuel,Troubl¨| Romain,Vardi Assaf,Jalabert Laetitia,Allemand Denis,Rouan Alice,Ghiglione Jean Fran?ois,Koren Ilan,Galand Pierre E.,Banaigs Bernard,Fin Jonathan,Sullivan Matthew B.,Forcioli Didier,Gilson Eric,Pedrotti Maria Luiza,Clampitt Megan,Moulin Cl¨|mentine.Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems[EB/OL].(2025-03-28)[2025-05-11].https://www.biorxiv.org/content/10.1101/2022.05.25.493210.点此复制
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