An open resource for nonhuman primate imaging
An open resource for nonhuman primate imaging
ABSTRACT Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMate Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 13 independent data collections aggregated across 11 sites (total = 98 macaque monkeys). We also outline the unique pitfalls and challenges that should be considered in the analysis of the non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.
Balezeau Fabien、Milham Michael P.、Koo Bonhwang、Ai Lei、Kastner Sabine、Mars Rogier B.、Menon Ravi S.、Messinger Adam、Morrison John H.、Nacef Jennifer、Schmid Michael、Seidlitz Jakob、Ungerleider Leslie、Thiele Alexander、Yacoub Essa、Jung Benjamin、Pinsk Mark、Schroeder Charles、Croxson Paula L.、Baxter Mark G.、Margulies Daniel S.、Leopold David A.、Everling Stefan、Harel Noam、Griffiths Timothy D.、Petkov Christopher I.、Ye Frank、Rushworth Matthew F.S、Rajimehr Reza、Xu Ting、Freiwald Winrich、Rios Michael Ortiz、Sallet Jerome、Poirier Colline、Schwiedrzik Caspar M.、Russ Brian E.、Damatac Christienne G.、Zarco Wilbert、Tsao Doris、Nagy Jamie
Center for the Developing Brain, Child Mind InstituteCenter for the Developing Brain, Child Mind Institute||Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric ResearchCenter for the Developing Brain, Child Mind InstituteCenter for the Developing Brain, Child Mind InstitutePrinceton Neuroscience Institute, Princeton UniversityDonders Institute for Brain||Wellcome Centre for Integrative Neuroimaging, Centre for Functional MRI of the Brain (FMRIB), Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of OxfordCentre for Functional and Metabolic Mapping, The University of Western OntarioLaboratory of Brain and Cognition, National Institute of Mental HealthCalifornia National Primate Research Center||Department of Neurology, School of Medicine, University of CaliforniaInstitute of Neuroscience, Newcastle UniversityInstitute of Neuroscience, Newcastle UniversityLaboratory of Brain and Cognition, National Institute of Mental Health||Developmental Neurogenomics Unit, National Institute of Mental Health||Brain Mapping Unit, Department of Psychiatry, University of CambridgeLaboratory of Brain and Cognition, National Institute of Mental HealthInstitute of Neuroscience, Newcastle UniversityCenter for Magnetic Resonance Research, University of Minnesota Medical SchoolLaboratory of Brain and Cognition, National Institute of Mental HealthPrinceton Neuroscience Institute, Princeton UniversityCenter for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research||Department of Neurological Surgery, Columbia University College of Physicians and Surgeons||Department of Psychiatry, Columbia University College of Physicians and SurgeonsDepartment of Neuroscience, Mount Sinai School of MedicineDepartment of Neuroscience, Mount Sinai School of MedicineMax Planck Research Group for Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain SciencesSection on Cognitive Neurophysiology and Imaging, National Institute of Mental Health||Neurophysiology Imaging Facility, National Institute of Mental Health, National Institute of Neurological Disorders and Stroke, National Eye InstituteCentre for Functional and Metabolic Mapping, The University of Western OntarioCenter for Magnetic Resonance Research, University of Minnesota Medical SchoolInstitute of Neuroscience, Newcastle UniversityInstitute of Neuroscience, Newcastle UniversitySection on Cognitive Neurophysiology and Imaging, National Institute of Mental Health||Neurophysiology Imaging Facility, National Institute of Mental Health, National Institute of Neurological Disorders and Stroke, National Eye InstituteWellcome Centre for Integrative Neuroimaging, Centre for Functional MRI of the Brain (FMRIB), Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford||Wellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordMcGovern Institute for Brain Research, Massachusetts Institute of TechnologyCenter for the Developing Brain, Child Mind InstituteLaboratory of Neural Systems, The Rockefeller UniversityInstitute of Neuroscience, Newcastle UniversityWellcome Centre for Integrative Neuroimaging, Department of Experimental Psychology, University of OxfordInstitute of Neuroscience, Newcastle UniversityLaboratory of Neural Systems, The Rockefeller UniversitySection on Cognitive Neurophysiology and Imaging, National Institute of Mental HealthDonders Institute for BrainLaboratory of Neural Systems, The Rockefeller UniversityDepartment of Computation and Neural Systems, California Institute of TechnologyDepartment of Neuroscience, Mount Sinai School of Medicine
神经病学、精神病学基础医学生物科学研究方法、生物科学研究技术
Balezeau Fabien,Milham Michael P.,Koo Bonhwang,Ai Lei,Kastner Sabine,Mars Rogier B.,Menon Ravi S.,Messinger Adam,Morrison John H.,Nacef Jennifer,Schmid Michael,Seidlitz Jakob,Ungerleider Leslie,Thiele Alexander,Yacoub Essa,Jung Benjamin,Pinsk Mark,Schroeder Charles,Croxson Paula L.,Baxter Mark G.,Margulies Daniel S.,Leopold David A.,Everling Stefan,Harel Noam,Griffiths Timothy D.,Petkov Christopher I.,Ye Frank,Rushworth Matthew F.S,Rajimehr Reza,Xu Ting,Freiwald Winrich,Rios Michael Ortiz,Sallet Jerome,Poirier Colline,Schwiedrzik Caspar M.,Russ Brian E.,Damatac Christienne G.,Zarco Wilbert,Tsao Doris,Nagy Jamie.An open resource for nonhuman primate imaging[EB/OL].(2025-03-28)[2025-05-09].https://www.biorxiv.org/content/10.1101/227462.点此复制
评论