Genome-wide association study of skin and soft tissue infection susceptibility
Genome-wide association study of skin and soft tissue infection susceptibility
Abstract BackgroundSkin and soft tissue infections (SSTIs) are common worldwide, but little is known about the genetic susceptibility and the causal effect of cardiometabolic risk factors. We therefore conducted the first genome-wide association study (GWAS) of SSTIs, with downstream analyses including Mendelian randomization analyses. MethodsThe GWAS was conducted using the UK Biobank as discovery cohort, with 6,107 cases and 399,239 controls, and the Tr?ndelag Health Study (HUNT) as replication cohort with 1,657 cases and 67,522 controls. Cases and controls were those who had or had not been hospitalized with an SSTI diagnosis, respectively. FindingsOne locus, lead single-nucleotide polymorphism rs3749748 in LINC01184/SLC12A2, was associated with SSTIs in the UK Biobank (odds ratio [OR] 1.19, p-value = 7.6e-16) and replicated in HUNT (OR 1.15, p-value = 6.3e-4). Meta-analysis confirmed the lead variant (OR 1.18, p-value = 4.4e-18), as well as suggested two additional loci close to genome-wide significance (rs2007361 in PSMA1, OR 0.91, p-value = 5.1e-8; and rs78625038 in GAN, OR 1.86, p-value = 5.9e-8). Gene-based association tests identified four genes linked to SSTIs: SLC12A2, PSMA1, GAN, and IL6R. The minor allele of rs3749748 reduced the gene expression of SLC12A2 primarily in monocytes and macrophages. Mendelian randomization analyses showed that increasing body mass index and lifetime smoking habits increased risk of SSTIs. InterpretationLINC0118/SLC12A2 was robustly associated with SSTI incidence and may exert its effect through reduced gene expression in monocytes and macrophages. Reducing tobacco smoking, overweight and obesity in the population may reduce the incidence of SSTIs.
?svold Bj?rn O、Rogne Tormod、Willer Cristen J、L?set Mari、Gill Dipender、Burgess Stephen、Dam?s Jan K、Sollig?rd Erik、Hveem Kristian、Rasheed Humaira、Brumpton Ben M、Thomas Laurent F、Liyanarachi Kristin V、Flatby Helene M、DeWan Andrew T
Department of Endocrinology||K.G. Jebsen Center for Genetic EpidemiologyGemini Center for Sepsis Research||Department of Chronic Disease Epidemiology and Center for Perinatal||Clinic of Anaesthesia and Intensive CareDepartment of Internal MedicineK.G. Jebsen Center for Genetic Epidemiology||Department of DermatologyClinical Pharmacology and Therapeutics Section||Clinical Pharmacology GroupMRC Biostatistics Unit||Cardiovascular Epidemiology UnitGemini Center for Sepsis Research||Centre of Molecular Inflammation Research||Department of Infectious DiseasesGemini Center for Sepsis Research||Clinic of Anaesthesia and Intensive CareK.G. Jebsen Center for Genetic Epidemiology||Department of ResearchK.G. Jebsen Center for Genetic Epidemiology||MRC Integrative Epidemiology UnitK.G. Jebsen Center for Genetic Epidemiology||MRC Integrative Epidemiology Unit||Clinic of Thoracic and Occupational MedicineK.G. Jebsen Center for Genetic Epidemiology||Department of Clinical and Molecular Medicine||BioCore ¨C Bioinformatics Core Facility||Clinic of Laboratory MedicineGemini Center for Sepsis Research||Department of Infectious DiseasesGemini Center for Sepsis Research||Clinic of Anaesthesia and Intensive CareDepartment of Chronic Disease Epidemiology and Center for Perinatal||Gemini Center for Sepsis Research
医学研究方法基础医学皮肤病学、性病学
?svold Bj?rn O,Rogne Tormod,Willer Cristen J,L?set Mari,Gill Dipender,Burgess Stephen,Dam?s Jan K,Sollig?rd Erik,Hveem Kristian,Rasheed Humaira,Brumpton Ben M,Thomas Laurent F,Liyanarachi Kristin V,Flatby Helene M,DeWan Andrew T.Genome-wide association study of skin and soft tissue infection susceptibility[EB/OL].(2025-03-28)[2025-04-26].https://www.medrxiv.org/content/10.1101/2020.09.03.20187468.点此复制
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