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Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources

Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources

来源:bioRxiv_logobioRxiv
英文摘要

To combat the ongoing COVID-19 pandemic, scientists have been conducting research at breakneck speeds, producing over 52,000 peer-reviewed articles within the first year. To address the challenge in tracking the vast amount of new research located in separate repositories, we developed outbreak.info Research Library, a standardized, searchable interface of COVID-19 and SARS-CoV-2 resources. Unifying metadata from twelve repositories, we assembled a collection of over 270,000 publications, clinical trials, datasets, protocols, and other resources as of May 2022. We used a rigorous schema to enforce consistency across different sources and resource types and linked related resources. Researchers can quickly search the latest research across data repositories, regardless of resource type or repository location, via a search interface, public API, and R package. Finally, we discuss the challenges inherent in combining metadata from scattered and heterogeneous resources and provide recommendations to streamline this process to aid scientific research.

Tsueng Ginger、Cano Marco Alvarado、Rush Benjamin、Lin Jason、Qian Zhongchao、Hufbauer Emory、Wu Chunlei、Hughes Laura D、Su Andrew I、Latif Alaa Abdel、Haag Emily、Gangavarapu Karthik、Outbreak Curators、Welzel Dylan J、Zhou Xinghua、Alkuzweny Manar、Mullen Julia、Zeller Mark、Andersen Kristian G

10.1101/2022.01.20.477133

医药卫生理论医学研究方法预防医学

Tsueng Ginger,Cano Marco Alvarado,Rush Benjamin,Lin Jason,Qian Zhongchao,Hufbauer Emory,Wu Chunlei,Hughes Laura D,Su Andrew I,Latif Alaa Abdel,Haag Emily,Gangavarapu Karthik,Outbreak Curators,Welzel Dylan J,Zhou Xinghua,Alkuzweny Manar,Mullen Julia,Zeller Mark,Andersen Kristian G.Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources[EB/OL].(2025-03-28)[2025-04-28].https://www.biorxiv.org/content/10.1101/2022.01.20.477133.点此复制

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