Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
ABSTRACT Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen dramatically in recent years, and tracking this data for reuse is particularly important for large-scale ecological and evolutionary studies of individual microbial taxa, microbial communities, and metagenomic assemblages. AncientMetagenomeDir (archived at https://doi.org/10.5281/zenodo.3980833) is a collection of indices of published genetic data deriving from ancient microbial samples that provides basic, standardised metadata and accession numbers to allow rapid data retrieval from online repositories. These collections are community-curated and span multiple sub-disciplines in order to ensure adequate breadth and consensus in metadata definitions, as well as longevity of the database. Internal guidelines and automated checks to facilitate compatibility with established sequence-read archives and term-ontologies ensure consistency and interoperability for future meta-analyses. This collection will also assist in standardising metadata reporting for future ancient metagenomic studies.
Gancz Abigail S.、Allshouse Aurora F.、Warinner Christina、Velsko Irina M.、Bravo-L¨?pez Miriam J.、H¨1bner Alexander、Fellows Yates James A.、Hider Jessica、Valtue?a Aida Andrades、Borry Maxime、Heintzman Peter D.、Fernandez-Guerra Antonio、Green Eleanor J.、Cribdon Becky、Ramachandran Shreya L.、Spyrou Maria A.、V?gene Ashild J.
Department of Anthropology, Pennsylvania State UniversityDepartment of Anthropology, Harvard UniversityDepartment of Archaeogenetics, Max Planck Institute for the Science of Human History||Department of Anthropology, Harvard UniversityDepartment of Archaeogenetics, Max Planck Institute for the Science of Human HistoryInternational Laboratory for Human Genome Research, National Autonomous University of MexicoDepartment of Archaeogenetics, Max Planck Institute for the Science of Human History||Department of Evolutionary Genetics, Max Planck Institute for Evolutionary AnthropologyDepartment of Archaeogenetics, Max Planck Institute for the Science of Human History||Institut f¨1r Vor- und Fr¨1hgeschichtliche Arch?ologie und Provinzialr?mische Arch?ologie, Ludwig Maximilian UniversityDepartment of Anthropology, McMaster University||McMaster Ancient DNA Centre, McMaster UniversityDepartment of Archaeogenetics, Max Planck Institute for the Science of Human HistoryDepartment of Archaeogenetics, Max Planck Institute for the Science of Human HistoryThe Arctic University Museum of Norway, UiT The Arctic University of NorwaySection for GeoGenetics, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen||Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine MicrobiologyBioArCh, Department of Archaeology, University of York||Department of Earth Sciences, Natural History MuseumSchool of Life Sciences, University of WarwickHuman Genetics, University of ChicagoDepartment of Archaeogenetics, Max Planck Institute for the Science of Human HistorySection for Evolutionary Genomics, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen
古生物学微生物学生物科学现状、生物科学发展
Gancz Abigail S.,Allshouse Aurora F.,Warinner Christina,Velsko Irina M.,Bravo-L¨?pez Miriam J.,H¨1bner Alexander,Fellows Yates James A.,Hider Jessica,Valtue?a Aida Andrades,Borry Maxime,Heintzman Peter D.,Fernandez-Guerra Antonio,Green Eleanor J.,Cribdon Becky,Ramachandran Shreya L.,Spyrou Maria A.,V?gene Ashild J..Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir[EB/OL].(2025-03-28)[2025-07-16].https://www.biorxiv.org/content/10.1101/2020.09.02.279570.点此复制
评论