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A Markovian dynamics for C. elegans behavior across scales

A Markovian dynamics for C. elegans behavior across scales

来源:bioRxiv_logobioRxiv
英文摘要

How do we capture the breadth of behavior in animal movement, from rapid body twitches to aging? Using high-resolution videos of the nematode worm C. elegans, we show that a single dynamics connects posture-scale fluctuations with trajectory diffusion, and longer-lived behavioral states. We take short posture sequences as an instantaneous behavioral measure, fixing the sequence length for maximal prediction. Within the space of posture sequences we construct a fine-scale, maximum entropy partition so that transitions among microstates define a high-fidelity Markov model, which we also use as a means of principled coarse-graining. We translate these dynamics into movement using resistive force theory, capturing the statistical properties of foraging trajectories. Predictive across scales, we leverage the longest-lived eigenvectors of the inferred Markov chain to perform a top-down subdivision of the worm's foraging behavior, revealing both "runs-and-pirouettes" as well as previously uncharacterized finer-scale behaviors. We use our model to investigate the relevance of these fine-scale behaviors for foraging success, recovering a trade-off between local and global search strategies.

Stephens Greg J、Ahamed Tosif、Costa Antonio Carlos、Jordan David

10.1101/2023.10.19.563098

生物物理学生物科学现状、生物科学发展动物学

Stephens Greg J,Ahamed Tosif,Costa Antonio Carlos,Jordan David.A Markovian dynamics for C. elegans behavior across scales[EB/OL].(2025-03-28)[2025-04-26].https://www.biorxiv.org/content/10.1101/2023.10.19.563098.点此复制

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