ePlant in 2021: New Species, Viewers, Data Sets, and Widgets
ePlant in 2021: New Species, Viewers, Data Sets, and Widgets
Abstract ePlant was introduced in 2017 for exploring large Arabidopsis thaliana data sets from the kilometre to nanometre scales. In the past four years we have used the ePlant framework to develop ePlants for 15 agronomically-important species: maize, poplar, tomato, Camelina sativa, soybean, potato, barley, Medicago truncatula, eucalyptus, rice, willow, sunflower, Cannabis sativa, wheat and sugarcane. We also updated the interface to improve performance and accessibility, and added two new views to the Arabidopsis ePlant – the Navigator and Pathways viewers. The former shows phylogenetic relationships between homologs in other species and their expression pattern similarities, with links to view data for those genes in the respective ePlants. The latter shows Plant Reactome metabolic reactions. We also describe new Arabidopsis data sets including single cell RNA-seq data from roots, and how to embed ePlant eFP expression pictographs into any web page.
Liu Yushan、Staton S. Evan、Brereton Nicholas、Le Cuong、Parkin Isobel、Pitre Fr¨|d¨|ric、Waese-Perlman Ben、Azhieh Amirahmad、Sullivan Alexander、Esteban Eddi、Hooper Cornelia、Ho Chantal、Millar A. Harvey、Pasha Asher、Lumba Shelley、Nelson Rex、Goodstein David、Provart Nicholas J.、Lukens Lewis、Lau Vincent、Ehlting Juergen、Ly George、Waese Jamie、Rieseberg Loren、Brown Anne
Department of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Botany, University of British ColumbiaDepartment of Biological Sciences, Universit¨| de Montr¨|alDepartment of Biology, University of VictoriaAgriculture and Agrifood Canada / University of SaskatchewanDepartment of Biological Sciences, Universit¨| de Montr¨|alDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoSchool of Molecular Sciences, ARC Centre for Plant Energy Biology ¨C University of Western AustraliaDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoSchool of Molecular Sciences, ARC Centre for Plant Energy Biology ¨C University of Western AustraliaDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoUnited States Department of AgriculturePhytozome, Joint Genome Institute, Lawrence Berkeley National LaboratoryDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Plant Agriculture, University of GuelphDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Biology, University of VictoriaDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Cell & Systems Biology / Centre for the Analysis of Genome Evolution and Function, University of TorontoDepartment of Botany, University of British ColumbiaUnited States Department of Agriculture
生物科学现状、生物科学发展生物科学研究方法、生物科学研究技术植物学
Liu Yushan,Staton S. Evan,Brereton Nicholas,Le Cuong,Parkin Isobel,Pitre Fr¨|d¨|ric,Waese-Perlman Ben,Azhieh Amirahmad,Sullivan Alexander,Esteban Eddi,Hooper Cornelia,Ho Chantal,Millar A. Harvey,Pasha Asher,Lumba Shelley,Nelson Rex,Goodstein David,Provart Nicholas J.,Lukens Lewis,Lau Vincent,Ehlting Juergen,Ly George,Waese Jamie,Rieseberg Loren,Brown Anne.ePlant in 2021: New Species, Viewers, Data Sets, and Widgets[EB/OL].(2025-03-28)[2025-07-16].https://www.biorxiv.org/content/10.1101/2021.04.28.441805.点此复制
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