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小麦生育后期叶片和籽粒应答供氮水平的转录谱特征研究

dentification on the Differentially Expressed Genes in Leaves and Grains Upon N Starvation Stress during Late Growth Stage in Wheat

中文摘要英文摘要

以生育后期小麦品种济麦22叶片和籽粒为材料,利用RNAseq高通量测序技术及生物信息学分析方法,对小麦上述器官应答低氮逆境的差异表达基因进行了鉴定。结果表明,与正常供氮的对照(N240)相比,低氮胁迫处理(N0)叶片中共检测到差异1835个表达基因,其中上调表达基因533个,下调表达基因1302个。GO功能注释和KEGG功能注释分析表明,上述差异表达基因主要涉及生物学过程、细胞组分、和分子功能三大类别,主要富集于mTOR信号通路、PI3K-Akt信号通路、Th1和Th2细胞分化、光合生物的固碳作用、淀粉和蔗糖代谢等信号或生化代谢通路。与对照相比,低氮处理籽粒中共鉴定410个差异基因,包括上调表达基因223个,下调表达基因187个。上述籽粒差异表达基因也主要归属于生物学过程、细胞组分、和分子功能三大类别,主要富集于在戊糖和葡萄糖醛酸盐相互转化、Th1和Th2细胞分化、T细胞受体信号通路和类苯基丙烷生物合成等代谢通路。研究表明,小麦生育后期对低氮胁迫的响应,与叶片和籽粒器官中众多参与细胞结构、分子功能和生物学过程的基因转录效率发生改变有关。

Using leaves and grains during late growth stage of wheat (cv. Jimai 22) as materials, the differentially expressed genes (DEGs) in above organs in response to N starvation stress were identified based on high-throughput RNAseq sequencing technique together with corresponding bioinformatic tools. Results indicated that compared with control (N240), totally 1835genes were shown to be differentially expressed in leaves under low-N stress treatment, including that 533 were up-regulated and 1302 were down-regulated. GO functional annotation and KEGG analyses indicated that the above differentially expressed genes were mainly involved in biological processes, cell components, and molecular functions and mainly enriched in signaling or biochemical pathways associated with mTOR signaling pathway, PI3K-Akt signaling pathway, Th1 and Th2 cell differentiation, carbon fixation in photosynthetic organisms, and starch and sucrose metabolism. Likewise, a total of 410 genes were found to be differentially expressed in grains that were treated by N starvation stress, of which, 223 were up-regulated and 187 were down-regulated. These differentially expressed genes are mainly divided into three categories including biological process, cell component and molecular function and overrepresented by those involved in MTOR signaling pathway, PI3K-Akt signaling pathway, Th1 and Th2 cell differentiation and bosynthesis of phenylpropane. Our results suggested that the responses of leaves and grains to external N starvation stress are closely associated with the modulation on transcription efficiency of a quantity of genes related to cellular structure, molecular function, and biological processes.

郭程瑾、张双、肖凯

农作物生物科学研究方法、生物科学研究技术植物学

关小麦供氮量水平转录组分析差异表达基因生化途径

riticum aestivumNitrogen supply levelTranscriptome analysisDifferentially expressed geneBiochemical pathways

郭程瑾,张双,肖凯.小麦生育后期叶片和籽粒应答供氮水平的转录谱特征研究[EB/OL].(2019-05-06)[2025-08-18].http://www.paper.edu.cn/releasepaper/content/201905-27.点此复制

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