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玉叶金花属(茜草科)植物DNA条形码研究

NA barcoding analysis of Mussaenda (Rubiaceae) species

中文摘要英文摘要

本研究利用DNA条形码技术进行玉叶金花属植物的分子鉴定。对玉叶金花属20种、89个个体进行叶绿体片段rbcL、matK和trnH-psbA以及核基因片段ITS进行PCR扩增和测序,计算种内和种间Kimura 2-parameter(K2P)遗传距离,利用序列相似性法和邻接法进行单一片段、核心片段和组合片段条形码的分析。单一片段分析结果表明玉叶金花属种间遗传距离(0.002 ~ 0.012)明显大于种内遗传距离(0.0003 ~ 0.0007)。trnH-psbA扩增率最低,matK和ITS片段的分辨率相对较高,rbcL片段的分辨率最低。片段组合后的分辨率明显提高,基于序列相似性法和邻接法,matK+rbcL+ITS和matK+rbcL+trnH-psbA+ITS的分辨率相当,分别约为77%和75%,成功鉴定了15个近缘类群。结果表明,matK+rbcL+ITS片段组合可以有效、快速、准确的鉴定玉叶金花属植物,为其药用植物的开发和利用提供分子鉴定工具。

his study aims to develop fast and accurate species identification methods for Mussaenda L. (Rubiaceae). Methods In the present study, DNA barcoding analysis was carried out on a total of 89 individuals representing 20 species of the genus Mussaenda in order to evaluate the performance of the four candidate barcoding loci (matK, rbcL , trnH-psbA and ITS). Methods of sequence similarity and Neighbor-joining tree were applied. Inter- and intra-specific genetic distances were detected based on Kimura 2-parameter (K2P). Inter-specific genetic distance was significantly higher than intra-specific genetic distance. Comparably high species discrimination power was revealed by the matK and ITS data set. The candidate barcode of rbcL displayed the lowest identification rate among the others. However, each individual candidate barcode demonstrated significantly lower discrimination power than the barcode of combined data set. Comparable discrimination power was revealed between the two barcodes of combined sequences matK+rbcL+ITS and matK+rbcL+trnH-psbA+ITS, which showed the values around 77% and 75% based on sequence similarity and Neighbor-joining tree method. Totally 15 species were identified based on Neighbor-joining analysis of matK+rbcL+ITS. Consequently, the combined sequences of matK+rbcL+ITS provide an effective and fast tool for identification and authentication of medicinal plants species in the genus Mussaenda. ?????

龚维、陈湜、涂铁要、邓小芳

分子生物学植物学

玉叶金花NA条形码物种鉴定matKpsbA-trnHrbcLITS?????

MussaendaDNA barcodingspecies identificationmatKpsbA-trnHrbcLITS

龚维,陈湜,涂铁要,邓小芳.玉叶金花属(茜草科)植物DNA条形码研究[EB/OL].(2015-02-09)[2025-08-16].http://www.paper.edu.cn/releasepaper/content/201502-98.点此复制

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