桔小实蝇不同组织基因表达转录分析中内参基因的筛选
Selection of endogenous references for gene expression profiling in different tissues of the oriental fruit fly Bactrocera dorsalis (Diptera: Tephritidae)
本研究比较了桔小实蝇10个看家基因在其中肠、马氏管和脂肪体等3个不同组织内相对表达量的稳定性,并使用两种不同的软件geNorm和Normfinder评价了这10个看家基因作为桔小实蝇不同组织中基因表达转录分析中内参基因的稳定性,并确定了最佳内参基因组合。结果表明,α-TUB + ACT5的组合在雌虫的三种组织间的表达最为稳定,而在雄虫的3个组织间表达最稳定的是ACT1 + ACT2。此外,我们还评价了桔小实蝇相同组织不同性别之间各看家基因相对表达量的稳定性。在中肠和马氏管中,ACT2 + ACT3是作为内参基因的最佳组合,而α-TUB + ACT1在脂肪体中是最好的选择。虽然两种软件计算的结果存在一定的差异,但是其结果都显示α-TUB是表达最稳定的基因之一。研究成果不仅将为今后利用qPCR技术研究桔小实蝇不同组织中基因表达模式奠定坚实的基础,同时也可为其它昆虫基因表达转录分析中内参基因的筛选提供参考。
In this study, we investigated the stability of ten candidate reference genes for gene expression study in three different tissues (midgut, Malpighian tubules, and fat body) of the oriental fruit fly, Bactrocera dorsalis (Hendel). Two different programs, geNorm and Normfinder, were used to analyze the data. According to geNorm, α-TUB + ACT5 are the most appropriate reference genes for gene expression profiling across the three different tissues in the female flies, while ACT1 + ACT2 are considered the best for males. Furthermore, we evaluated the stability of the reference gene candidates, and selected out appropriate reference gene to determine the sexual differences in gene expression in the same tissue. In the midgut and Malpighian tubules, ACT2 + ACT3 are the best choice for both males and females. However, α-TUB + ACT1 are the best pair for fat body. Although the results calculated by Normfinder are different from geNorm in rankings, α-TUB is always one of the most stable genes in each sample calculated by the two programs. This work not only formed a solid basis for future gene expression study using real-time PCR, but also will serve as a resource to screen insect reference genes for gene expression studies in any other insects.
申光茂、王晓娜、王进军、蒋红波
昆虫学分子生物学
桔小实蝇内参基因正态化组织性别差异
oriental fruit flyreference genesnormalizationtissuessexual difference
申光茂,王晓娜,王进军,蒋红波.桔小实蝇不同组织基因表达转录分析中内参基因的筛选[EB/OL].(2010-03-19)[2025-08-04].http://www.paper.edu.cn/releasepaper/content/201003-588.点此复制
评论