苦荞 FtF5H 基因克隆及表达分析
阿魏酸-5-羟基化酶(Ferulate 5-hydroxylase)是调控 S 型木质素合成的关键酶。为研究其在苦荞木质素生物合成途径中的分子机制,该文从苦荞转录组数据中筛选获得一个 F5H基因,命名为 FtF5H(Genebank 登录号:MW455111),采用生物信息学方法对苦荞 F5H 蛋白的理化性质、信号肽、跨膜结构、亚细胞定位、亲疏水性、蛋白质二级结构、蛋白质三级结构、氨基酸结构、系统进化树等进行分析和预测,并同时运用实时荧光定量PCR技术对FtF5H基因在厚果壳苦荞与薄果壳苦荞的叶、花、茎、果壳中的差异表达进行分析。结果表明:FtF5H 基因序列包含 1 395 bp 的完整 cDNA 开放阅读框,编码 464 个氨基酸;生物信息学预测 FtF5H 蛋白具有 P450 超家族结构,为亲水性稳定酸性蛋白,不具有跨膜结构域,且为非分泌性蛋白;FtF5H 蛋白的二级结构主要由α-螺旋和无规则卷曲组成;三级结构预测显示FtF5H 蛋白与 5ylw.1.A 的相似度较高。系统进化分析表明 FtF5H 属于 CYP84A 亚家族。 qRT-PCR 显示 FtF5H 基因在两种苦荞中的不同部位均有表达,且在厚果壳苦荞果壳中的表达量是薄果壳的 5 倍之高,表达具有极显著差异。该研究为进一步研究苦荞木质素合成的分子调控机制奠定了基础,对苦荞新品种的培育具有重要的意义。
he Convolvulaceae is a pantropical family with high morphological diversity and economic values. To date, however, the phylogenetic relationships among the major lineages or tribes in the family have not been fully resolved. In order to resolve these relationships, we sampled the complete plastome sequences from 40 species, representing eight recognized tribes of Convolvulaceae, and reconstructed phylogenetic trees by using both Maximum Likelihood and Bayesian Inference approaches. As the main results, we found that: (1) Convolvulaceae plastomes have the typical quadripartite structure, with the genome size ranging from 113 273 bp to 164 112 bp and including 66-79 protein-coding genes. (2) Phylogenomic analyses using five datasets (i.e., WCG, CDS, LSC, IR, and SSC matrixes) show that the topologies of the WCG and CDS trees are identical, with differences in support values for some nodes. Topological differences were found between LSC and WCG topologies, especially for the positions of Cuscuteae, Dichondreae, and Cresseae. The AU and SH tests show that topological conflicts are significant between the WCG tree and the SSC and IR trees. (3) All phylogenetic analyses confirm that Cuscuta and Dichondreae are nested in Convolvuloideae and should be treated as tribes. (4) Phylogenetic relationships among the eight tribes are well resolved using the WCG and CDS datasets: Cardiochlamyeae and Erycibeae form a clade as the first divergent group of Convolvuloideae, followed by Cuscuteae, with the remaining five tribes forming two major clades. (6) The phylogenomic analyses confirm that Merremieae, and in particular the genus Merremia, are polyphyletic, and that the circumscription and taxonomy of both Merremieae and Merremia need revision.
段迎、贺润丽、卢文洁、王艳青、尹桂芳、杨晓琳、孙道旺、蔡苏云、王莉花
植物学生物科学研究方法、生物科学研究技术分子生物学
苦荞,RT-PCR 克隆,阿魏酸-5-羟基化酶,生物信息学分析,基因表达
段迎,贺润丽,卢文洁,王艳青,尹桂芳,杨晓琳,孙道旺,蔡苏云,王莉花.苦荞 FtF5H 基因克隆及表达分析[EB/OL].(2021-07-20)[2025-08-21].https://chinaxiv.org/abs/202107.00067.点此复制
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