CDMAP/CDVIS: Context-dependent Mutation Analysis Package and Visualization Software
CDMAP/CDVIS: Context-dependent Mutation Analysis Package and Visualization Software
Abstract The Context-dependent Mutation Analysis Package and Visualization Software (CDMAP/CDVIS) is an automated, modular toolkit used for analysis and visualization of context-dependent mutation patterns (site-specific variation in mutation rate from neighboring-nucleotide effects). The CDMAP algorithm calculates context-dependent mutation rates in chromosomes or replichores, and can generate high-resolution figures to analyze variation in mutation rate across spatiotemporal scales. Output from CDMAP can be integrated into CDVIS, an interactive database for visualizing mutation patterns across multiple taxa simultaneously.
Cardenas Thomas、Navarro Jon、Sung Way、Patton David L.、Mele Perrin
Department of Bioinformatics and Genomics, University of North CarolinaDepartment of Bioinformatics and Genomics, University of North CarolinaDepartment of Bioinformatics and Genomics, University of North CarolinaDepartment of Bioinformatics and Genomics, University of North CarolinaDepartment of Bioinformatics and Genomics, University of North Carolina
生物科学研究方法、生物科学研究技术计算技术、计算机技术分子生物学
Context-Dependent MutationsSoftware PackageR SoftwareInteractive Visualization ToolMutation Accumulation
Cardenas Thomas,Navarro Jon,Sung Way,Patton David L.,Mele Perrin.CDMAP/CDVIS: Context-dependent Mutation Analysis Package and Visualization Software[EB/OL].(2025-03-28)[2025-08-02].https://www.biorxiv.org/content/10.1101/2022.02.03.479067.点此复制
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