分子对接技术探究RITA与MDM2和MDMX相互作用的分子机制
Simulation study on the molecular mechanism of RITA interaction with MDM2 and MDMX?????
当前肿瘤治疗和药物设计中越来越多的研究集中在如何抑制p53蛋白与MDM2和MDMX之间的相互作用。RITA是潜在的抑癌小分子,能诱导p53基因在肿瘤细胞中的积累,但其作用机制是有争议的,且很少有报道的MDMX与RITA的相互作用。在本研究中,我们利用分子对接技术,模拟RITA分别与MDM2和MDMX之间的相互作用,对比二者的交互作用的分子机制。我们利用DS3.0的分子对接模块,计算发现RITA小分子与MDMX蛋白之间存在10个相互作用的活性位点,而与MDM2存在1个相互作用的活性位点。进一步的结果分析,发现RITA-MDMX中活性位点6的打分分值最高:CDOCKER_ENERGY:-33.27 kcal/mol; CDOCKER_INTERACTION_ENERGY: -41.10 kcal/mol; RMSD :31.88 ?.在RITA-MDM2相互作用中对应的数值分别是:-20.15 kcal/mol , -28.09 kcal/mol and 33.93 。同时RITA-MDMX之间形成3个氢键,其中MDMX中与之相互作用的氨基酸残基分别是Asp79,Lys63,和lys35。MDM2蛋白作用的氨基酸残基是Lys51。本次模拟分子对接结果显示,与MDM2蛋白比较,蛋白MDMX与RITA结合位点较多,亲和力较强。提示RITA有可能与MDMX相互作用起到激活肿瘤p53功能。
Inhibition of the interactions between the tumor suppressor protein p53 and its negative regulators, the MDM2 and MDMX oncogenic proteins, is increasingly gaining interest in cancer therapy and drug design. RITA a potential tumor suppressor molecular which can induce accumulation of P53 in tumor cells, but its mechanism is controversial and has rarely reports on MDMX interacting with RITA . In this study, we carried out molecular docking simulations on RITA to MDM2 and MDMX to find the possible mechanism of RITA. After molecular docking with DS3.0 programs, ten active sites have found in MDMX-RITA interaction, and one active site has found in MDM2-RITA interaction. Analysis of MDMX binding to RITA, active site 6 get higher scores. The CDOCKER_ENERGY is -33.27 kcal/mol; CDOCKER_INTERACTION_ENERGY is -41.10 kcal/mol; RMSD is 31.88 ?. And results of MDM2 binding to RITA are -20.15 kcal/mol , -28.09 kcal/mol and 33.93 ? in turn. There are three Hbonds between MDMX and RITA while only 1 between RTIA and MDM2.. The interacting amino-acid residues of MDMX are ASP79, LYS63, and LYS35.The amino-acid residue of MDM2 is LYS51.In conclusion, the intermolecular affinity between RITA and MDMX is better than MDM2, which means that RITA may bind to MDMX to activate p53 function in tumors.
钱思浓、蒋泉、吴清华、胡静
肿瘤学分子生物学药学
分子模拟MDM2MDMXRITA小分子-蛋白质相互作用
molecular simulationsMDM2MDMXRITAmechanism of small molecular-protein interaction
钱思浓,蒋泉,吴清华,胡静.分子对接技术探究RITA与MDM2和MDMX相互作用的分子机制[EB/OL].(2014-04-15)[2025-06-14].http://www.paper.edu.cn/releasepaper/content/201404-181.点此复制
评论