甜瓜花器官发育相关基因的电子克隆及表达分析
In Silico Cloning and Expression of Flower Development Related Gene ofCucumis melo
以厚皮甜瓜(Cucumis melo)'WI998'(纯雌系)与'TopMark'(雄全同株)配制杂交组合获得的RIL6 群体为材料,对分离后代雌雄异花同株,雄全同株,完全花植株及纯雌株进行转录组测序,利用生物信息学分析方法,获得花器官发育相关基因序列Un16008,命名为CmTs2。该序列位于甜瓜第12 条染色体上,长度1 842 bp,119 ~ 832 之间存在一个包含237 个氨基酸的最大开放式阅读框,成熟蛋白分子量为25 358.8 D,该蛋白不稳定系数为21.6,脂肪系数是99.11,平均亲水系数为0.078。通过Blast比对发现该基因与多种作物Tasselseeds2(TS2)基因具有高度同源性,其中与黄瓜Tasselseeds2 基因同源性高达96%。通过实时荧光定量PCR 检测,发现该基因在甜瓜雌雄异花同株花和叶片中表达量均高于其 它性别类型植株,在纯雌株中表达量最低,说明该基因可能参与甜瓜花器官发育,尤其是雌花发育的过程。
Using transcriptom sequencing technology to analysis and detected different expressed gene among monoecious,andromonecious,gynoecious and hermaphrodite families from WI998 (gynoecious)cross Topmark(andromonecious),a full length of 1 842 bp which locates in chromosome12,named CmTs2,was obtained from bioinformatics methods. Sequence analysis indicated that the CmTs2consisting an open reading frame(ORF)which from 119 to 832 nucleotides encoding 237 amino acids withmolecular weight 25 358.8 D,instability index is 21.6 and aliphatic index is 99.11,grand average ofhydropathicity is 0.078. Blast alignment analysis indicated highly homologous to Ts2 gene especially forcucumber which has 96% homologous relationship,pathway analysis indicated CmTs2 gene located theupstream of gibberellin synthesis pathway. Real time-PCR analysis indicated that the expression level of CmTs2 was highest expressed in andromonecious but lowest in gynoecious in leaf and flower,which showed the CmTs2 gene might involve in the flower development female flower.
盛云燕、王霞、王洋洋
遗传学分子生物学植物学
甜瓜转录组测序花器官基因表达
ucumis melotranscriptom sequencesex expressiongene expression
盛云燕,王霞,王洋洋.甜瓜花器官发育相关基因的电子克隆及表达分析[EB/OL].(2014-03-14)[2025-08-16].http://www.paper.edu.cn/releasepaper/content/201403-505.点此复制
评论