转录组测序揭示虎榛子抗旱的遗传机制
ranscriptome analyses revealed genetic mechanisms underlying the drought tolerance of Ostryopsis davidiana
抗旱研究对于作物和森林物种遗传改良十分重要。为了揭示虎榛子抗旱的分子机制,本研究对虎榛子利用Illumina Genome Analyzer II 进行了转录组测序。16,656,446个过滤好的读序使用Trinity组装,得到32,425 个EST序列。其中27,480个EST序列在NR蛋白库中有同源序列。使用Blast2go和KAAS进行基因注释,得到了22126 个EST的GO注释和9246个EST的代谢通路注释。本研究进一步根据已知植物抗旱机制从虎榛子转录组中找出了一系列干旱耐受相关基因。这些基因或是参与脱落酸对气孔关闭的调控,或是促进渗透调节物的合成,或是参与叶黄素循环和自由基清除,或是促进蜡和水通道的合成。这些序列比较系统的反映了虎榛子的抗旱分子机制。本研究将极大促进虎榛子属的深入研究,对抗旱机制进化的比较生物学分析也有着重要意义。
o undersand moleuclar bases under the drought tolerance of plants is crucial for genetic improvement of the cultivated crops and forests. In this study, we sequenced trancriptome data of Ostryopsis davidiana (Betulaceae), a shrub species with high drought tolerance in northern and northwestern China, by Illumina Genome Analyzer II. A total of 16,656,446 clean pair-end reads are assembled into 32425 ESTs by Trinity. Among these EST sequences, 27480 ESTs have blast hits in NR protein database. Using blast2go and KAAS for gene annotation, 22126 ESTs are annotated with GO terms and 9246 ESTs are grouped into diverse pathways. Further analyses identifieed genes involved in different aspects of drought tolerance, including those related to regulation of stomatal closure by abscisic acid, the production of osmotic compounds, xanthophyll cycle, wax formation and synthesis of aquaporins. These genes likely play an important role underlying drought tolerance of this shub species. These findings will help us understand drought tolerance of this species and further comparative studies with other species with high drought tolerance.
邱强、鲁志强、刘建全、刘兵兵、马会
植物学遗传学分子生物学
转录组虎榛子抗旱
ranscriptomeOtryopsis davidianadrought tolerance
邱强,鲁志强,刘建全,刘兵兵,马会.转录组测序揭示虎榛子抗旱的遗传机制[EB/OL].(2013-04-03)[2025-08-18].http://www.paper.edu.cn/releasepaper/content/201304-111.点此复制
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