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甘蔗B12D基因cDNA全长克隆与表达分析

loning and Expression Analysis of B12D Gene in Sugarcane

中文摘要英文摘要

对甘蔗(Saccharum officinarum)茎全长cDNA 文库进行大规模测序,获得了B12D基因的全长cDNA 序列,命名为ScB12D(GenBank:KF714497)。生物信息学分析表明,该基因全长771bp,编码87氨基酸(ORF,104~367bp)。该基因编码的蛋白无信号肽,为亲水性非分泌型蛋白;有一个B12D家族保守结构域,二级结构为无规则卷曲;基因定位于质膜,参与能量代谢。荧光定量分析结果表明,在非生物胁迫时,该基因的表达受氯化钠胁迫后表达量最高,在脱落酸胁迫下表达量次之;在生物胁迫黑穗病胁迫下,该基因的表达量在不同时间段下呈下调趋势。表明该基因的表达可能与甘蔗响应生物和非生物胁迫的机制有关。研究结果为甘蔗B12D基因的克隆、功能验证及其在甘蔗基因工程中的应用打下了基础。

full length cDNA sequence of sugarcane gene was obtained from sugarcane(Saccharum officinarum ) stem full length cDNA library through large-scale sequencing and validated by the corresponding bioinformatics analysis, termed ScB12D (Genbank :KF714497). The full length of ScB12D gene was 771 bp, with a 264 bp open reading frame (ORF), encoded 87 amino acids residues. The ScB12D of sugarcane was a basic protein, which has a conserved functional domains with the main function for energy metabolism, and this protein was located in plasma membrane. The mainly secondary structure element was random coil. Real-time quantitative PCR (RT-qPCR) analysis revealed that the expression of ScB12D in the NaCl stress was the highest in abiotic stresses and it showed slightly lower under the abscisic acid stress. Moreover, after inoculation with Sporisorium scitamineum, the expression of this gene decreased in the different time points. It can be to some extent inferred that the sugarcane B12D gene associated with the reaction mechanism of sugarcane to biotic and abiotic stresses. The results obtained in the present study will provide the basis of cloning and functional identification of other members of B12D in sugarcane and promote the use of B12D gene in sugarcane genetic engineering.

黄宁、阙友雄、肖新换、许莉萍、苏炜华、黄珑、张玉叶

分子生物学植物学遗传学

甘蔗B12D基因生物信息学荧光定量PCR

SugarcaneB12D geneBioinformaticsReal-time PCR

黄宁,阙友雄,肖新换,许莉萍,苏炜华,黄珑,张玉叶.甘蔗B12D基因cDNA全长克隆与表达分析[EB/OL].(2013-12-09)[2025-08-05].http://www.paper.edu.cn/releasepaper/content/201312-205.点此复制

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